A young programmer is selected to participate in a ground-breaking experiment in synthetic intelligence by evaluating the human qualities of a highly advanced humanoid A.I.

Upon attempting to divulge a diabolical plot of the futuristic theme park, Futureworld, an ex-employee is dispatched after he tips off the reporter who exposed Westworld. The reporter and his ex-co-reporter investigate the situation.

A.D. 2034. It has been two years since Motoko Kusanagi left Section 9. Togusa is now the new leader of the team, that has considerably increased its appointed personnel. The expanded new Section 9 confronts a rash of complicated incidents, and investigations reveal that an ultra-wizard hacker nicknamed the "Puppet Master" is behind the entire series of events.

Kenichi and his uncle Shunsaku Ban must find the mystery behind robot girl Tima.